PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G050200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 349aa    MW: 37938.3 Da    PI: 6.8003
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G050200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.57e-20192286294
                         EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         +kvl++sdv+++gr+vlpkk ae+h  ++k++ ++ + +ed  ++r+W++++++  ++ks++y+l+ ++ +Fv++n+L+egDf+v++  ++
  Brast01G050200.1.p 192 QKVLKQSDVGSLGRIVLPKKEAETHlpELKTRDGISIPMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGDFVRSNELQEGDFIVIY--SD 279
                         79*************************999***********7778*******99777777777777.*******************9..55 PP

                         SEE..EE CS
                  B3  88 sefelvv 94 
                          ++++++
  Brast01G050200.1.p 280 VKGRYLI 286
                         5555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-27185283IPR015300DNA-binding pseudobarrel domain
CDDcd100154.48E-36189289No hitNo description
SuperFamilySSF1019361.12E-22190285IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.9E-18191292IPR003340B3 DNA binding domain
PROSITE profilePS5086310.08191292IPR003340B3 DNA binding domain
PfamPF023623.0E-16192284IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDASAGSPPP PHSQQNHGGG GRPGKAPVGE IRAGEASPDE FLFADDTFPS LPDFPCLSSP  60
SSSTFSSSSS AFTAATTGGE QHSAAAEDGI DALADLDQLL DFASLSVPSW EDEPLCPDDV  120
GMMLEDAMSD DHKPPARRSW MGAPSHRRPQ IRSGRITRDF FSLEARTSLS GDRDPRGANT  180
KPADKNLRFL LQKVLKQSDV GSLGRIVLPK KEAETHLPEL KTRDGISIPM EDIGTSRVWN  240
MRYRFWPNNK SRMYLLENTG DFVRSNELQE GDFIVIYSDV KGRYLIRGVK VRPVQDQAGK  300
HKHGIPGNRG GASDVKTGPE DRGCKEKSPH GAQRSRQEAT GTMMAVRI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4167531e-124DQ416753.1 Avena fatua clone 1 viviparous 1 mRNA, partial cds.
GenBankDQ4167541e-124DQ416754.1 Avena fatua clone 2 viviparous 1 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232723.11e-112PREDICTED: B3 domain-containing protein VP1 isoform X2
SwissprotP373987e-74VIV_ORYSJ; B3 domain-containing protein VP1
TrEMBLI1HUG61e-112I1HUG6_BRADI; Uncharacterized protein
STRINGBRADI2G58390.11e-111(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75293443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.19e-63B3 family protein